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Season 1 · Episode 9

Hell on Weils

13:24Updated November 10, 2026

How does Mardi Gras and Carnival connect to leptospirosis? From New Orleans parades to Brazil’s Carnival, uncover the link between reservoirs, Leptospira bacteria, and the hidden dangers lurking in water and soil.

0:0013:24
Transcript

In this episode

A costumed performer in an elaborate white feathered headdress and outfit on a Rio Carnival float at night

Carnival de Brazil

CC BY-SA 4.0
Scanning electron micrograph of two thin, tightly coiled Leptospira bacteria with hooked ends

Leptospira

© Janice Carr, CDC, public domain

From Mardi Gras to the Mud#

New Orleans during Mardi Gras is one long party, the streets a blur of parades and floats and beads and king cakes in purple, green, and gold. It is also a city whose rats carry a long list of pathogens, including the one behind this episode: leptospirosis. The biggest celebrations tend to happen in places this disease favors, warm, crowded, and prone to flooding, and Rio’s Carnaval sits in the middle of just such a city. Leptospirosis is, by most reckonings, the most widespread animal-borne disease in the world, and it is easy to miss: reservoirs shed it without looking sick, and people often never report the mild cases. The way into a disease that hides in kidneys and floodwater is to watch the animals that carry it.

The Canary in the Coal Mine#

In Brazil in the late 2000s, the forests went quiet. Howler monkeys, normally among the loudest animals in the Americas, began dying in large numbers, and the silence was itself the alarm. Testing the dead monkeys revealed yellow fever virus, and because New World monkeys sicken and die fast when infected, their die-offs work as an early-warning system; Brazil runs a national surveillance program built on exactly this, using monkey deaths to trigger human vaccination ahead of an outbreak. During the 2008-2009 yellow fever outbreak in southern and southeastern Brazil, those monkey deaths preceded the human cases and helped drive a vaccination campaign of millions of doses.

This is the old idea of the canary in the coal mine made literal. For most of the twentieth century, miners carried caged canaries underground, watching for the bird to falter as a sign of toxic gas; Britain announced the end of the practice in 1986. The principle keeps proving itself. In 1999, residents of New York City noticed an unusual number of dead crows around the same time that an unexplained cluster of human encephalitis appeared, and the two turned out to share a cause: West Nile virus, making its first-ever appearance in the Western Hemisphere. The crows were the sentinels. A 2009 Lancet Infectious Diseases column with a deliberately silly title argued that epidemiologists still under-use animal populations this way, because so many dangerous pathogens live in an animal reservoir, a host that can carry and shed a microbe without being sick itself, long before they reach people. A reservoir can be an animal, an environment like water or the soil that harbors anthrax, or even a person, the asymptomatic human carrier of whom Typhoid Mary is the most famous. For leptospirosis, the reservoir and the sentinel are often the same humble creature: the rat.

Hell on Weils#

The disease has a second name, Weil’s disease, after the nineteenth-century German physician who described its severe form, which is why you sometimes hear it said with a softer, V-like opening. It is caused by Leptospira, a spirochete, a bacterium coiled like a tight little spring with hooked ends, propelled by internal flagella that let it corkscrew through tissue. It is, by most reckonings, the most common zoonotic infection on the planet. The trick to its success is where it lives: Leptospira colonizes the kidneys of animals, rats and other rodents above all but also dogs, cattle, pigs, and wildlife, and those animals shed it in their urine, often for life, without falling ill. From there it pours into soil and standing water, where it can survive for weeks to months.

People catch it not from a bite but from the water and mud, when the bacteria slip in through a cut, a scrape, or the soft tissue of the eyes, nose, or mouth. That is why the classic victims are people who get wet in the wrong places: kayakers, swimmers, rowers, farmers, veterinarians, sewer workers, and, above all, the residents of crowded tropical cities after a heavy rain, when floodwater stirs the rats’ world into everyone’s. A 2015 global estimate puts it at about a million cases and nearly fifty-nine thousand deaths a year, concentrated in exactly those warm, flood-prone, densely populated places. In the United States, by contrast, there are only about a hundred to a hundred and fifty cases a year, most of them in Puerto Rico and Hawaii.

The Disease That Hides#

What makes leptospirosis so easy to miss is that most of the time it barely announces itself. Most infections are mild, a flu-like stretch of fever, headache, and aching muscles that people often never report, assuming they simply caught a bug. The illness can run a biphasic course, an early phase when the bacteria are in the blood, a brief lull, and then, in a minority, a second and far nastier phase. Perhaps 5 to 10 percent of cases turn severe, with abrupt high fever, vomiting, and the jaundice, a yellowing of the eyes and skin, that signals the liver is in trouble, often alongside kidney failure. The worst version is the one Weil put his name to: severe leptospirosis with multi-organ involvement, where kidney failure, liver failure, bleeding into the lungs, and meningitis can converge into a high-mortality crisis.

Doctors confirm it by amplifying the bacterium’s DNA with PCR, by testing for antibodies, or by culturing the organism from a sample like urine. Caught in time it is treatable, with oral antibiotics such as doxycycline or amoxicillin for milder cases and intravenous antibiotics for severe ones. There are vaccines for animals and pets, which is part of how you protect people, but no widely approved human vaccine in the United States. A disease this common and this often-silent is precisely the kind you would want an early-warning system for, which brings the whole thread back around.

The Party and the Plague#

Carnaval and leptospirosis share a stage: warm, crowded, rain-soaked cities where floodwater can move rat urine into human skin and mucosa. The rains that soak a celebration are the same rains that flush Leptospira into the places people wade. The early signs are often still in the animals first, the howler monkeys going silent ahead of yellow fever, the crows dropping ahead of West Nile, the rats carrying a passenger in their kidneys through a flooded gutter. Weil’s disease is the severe end of a common zoonosis that spends most of its time looking like nothing much. Looking where the reservoir lives is how you catch it before the hospital census does.

Corrections to the audio#

The episode audio states eight things that are wrong. The corrections:

  • At 02:10, the festival’s name is traced to “carne vale”, “goodbye meat”. Dictionaries trace “carnival” to Italian carnevale, from earlier carnelevare, “removal of meat” (Merriam-Webster).
  • At 02:15, Carnival is said to indicate the start of Lent. Carnival is the season of merrymaking before Lent (Merriam-Webster).
  • At 04:33, the 1999 crow deaths are said to show West Nile virus making its way toward New York City. The crows were dying in northern Queens, in New York City itself, where the first human cases began that August (Emerging Infectious Diseases).
  • At 06:02, sheep are described as carrying anthrax without symptoms. Anthrax bacteria live in soil, and sheep and other livestock can become infected and severely ill (CDC, About Anthrax).
  • At 06:51, the cause is named as Leptospira borgpetersenii. Several pathogenic Leptospira species cause leptospirosis: L. interrogans is the most common in human infections, and L. borgpetersenii is one of the others (Salaün et al., Journal of Clinical Microbiology).
  • At 07:25, lipopolysaccharide is called a protein. LPS is a lipid (lipid A) joined to sugar chains, not a protein (Raetz and Whitfield, Annual Review of Biochemistry).
  • At 07:37, LPS is said never to become detached. Gram-negative bacteria release LPS, for example in outer membrane vesicles (Chen et al., Frontiers in Immunology).
  • At 09:41, jaundice is attributed to kidney failure. Jaundice comes from bilirubin building up when the liver cannot clear it (MedlinePlus, Jaundice).

Hosts

Chapters

Sources and Credits
  1. CreditWritten and performed by Dr. Dustin Edwards and Dr. Faith Cox (another site)
  2. MusicMain Stem by the U.S. Army Blues (another site)Free Music ArchiveCC0 1.0
  3. MusicModern Jazz Samba by Kevin MacLeod (another site)incompetech.comCC BY 4.0
  4. ImageCarnaval Queen, Rio de Janeiro (another site)CC BY-SA 4.0
  5. ImageLeptospira (another site)Janice Haney CarrCDCPublic domain
  6. referenceLeptospirosis (StatPearls) (another site)NCBI Bookshelf / NIHLeptospirosis (Weil disease) is the most common zoonotic infection in the world, caused by the spirochete Leptospira and spread through the urine of infected animals via contaminated soil or water; the severe icteric form (Weil disease) can progress to multi-organ failure.
  7. referenceA Challenging Case of Weil's Syndrome in New York City (another site)PMCLeptospira colonize the renal tubules of reservoir animals (rodents, dogs, sheep, horses), which shed the bacteria in urine for life; ~90% of cases are mild (anicteric), a minority progress through a biphasic course to jaundice, renal failure, meningitis, or pulmonary hemorrhage (Weil's disease).
  8. referenceGlobal Morbidity and Mortality of Leptospirosis: A Systematic Review (another site)PLoS Neglected Tropical Diseases (Costa et al., 2015)An estimated 1.03 million leptospirosis cases and 58,900 deaths occur worldwide each year, concentrated in tropical regions with poor sanitation and frequent flooding.
  9. referenceAbout Leptospirosis (another site)U.S. CDCLeptospirosis spreads through the urine of infected animals in water and soil; some people have no symptoms, and some develop a more severe second phase with kidney or liver failure.
  10. referenceWeil's Disease in an HIV-Infected Patient (US epidemiology) (another site)PMCLeptospirosis is uncommon in the US, with about 100-150 cases reported annually, the majority in Puerto Rico and Hawaii; only 5-10% develop the severe liver-and-kidney-failure form (Weil's disease).
  11. referenceSurveillance for Yellow Fever Virus in Non-Human Primates in Southern Brazil (another site)PMC (PLoS Neglected Tropical Diseases)Sudden die-offs of New World monkeys (especially howler monkeys, Alouatta) signal yellow fever virus circulation and provide early warning to humans; Brazil uses monkey-death surveillance to time vaccination, including during the 2008-2009 outbreak.
  12. referenceCrow Deaths as a Sentinel Surveillance System for West Nile Virus, 1999 (another site)CDC, Emerging Infectious DiseasesThe 1999 West Nile virus outbreak, the first in the Western Hemisphere, killed thousands of American crows; dead crows became a recognized early-warning surveillance system for the virus.
  13. referenceNYC reports first cases of West Nile virus (1999) (another site)History.comAs an unexplained encephalitis cluster appeared in New York City in 1999, residents noticed large numbers of dead crows and dead birds at the Bronx Zoo; the shared cause was West Nile virus.
  14. referenceAmplification of pathogenic Leptospira infection with greater abundance and co-occurrence of rodent hosts across a counter-urbanizing landscape (another site)Molecular Ecology (Peterson et al., 2021)Pathogenic Leptospira infects rodents across post-Katrina New Orleans, with the highest infection loads where more rodent species occur together.
  15. referenceBlack howler monkey (another site)Smithsonian's National ZooBlack howler monkeys are the loudest terrestrial animals in the Western Hemisphere; a howler's call can carry about 3 miles.
  16. referenceWhat Happened to the Canary in the Coal Mine? (another site)Smithsonian Magazine (Eschner, 2016)Canaries were staples of coal mining through much of the 20th century, a method conceived by John Scott Haldane; Britain ended their use in mines in December 1986.
  17. referenceI'm not going outside until I check on my gerbil (another site)The Lancet Infectious Diseases (Dixon, 2009)Bernard Dixon's column (vol. 9, p. 527), the gerbil paper discussed in the episode.
  18. referenceAbout Anthrax (another site)U.S. CDCThe bacteria that cause anthrax occur naturally in soil worldwide; livestock and wild animals, including sheep, become infected by breathing in, eating, or drinking spores.
  19. referenceA Short History of Occupational Disease: 3. Leisure Can Make You Sick (another site)Ulster Medical Journal (Petts et al., 2021)Recreational waters present risks to canoeists and rowers, including leptospirosis and its severe form, Weil's disease.
  20. referenceLeptospirosis (CDC Yellow Book) (another site)U.S. CDCLeptospira enter through cuts or abrasions in the skin, or through the conjunctiva and mucous membranes; no human vaccine is available in the United States.
  21. referenceRat Lungworm Infection in Rodents across Post-Katrina New Orleans, Louisiana, USA (another site)CDC, Emerging Infectious Diseases (Rael et al., 2018)Rat lungworm infected rodents in every area sampled across New Orleans, about 38% overall; the authors note it is just one of many pathogens urban rats harbor.
  22. referenceOld World Hantaviruses in Rodents in New Orleans, Louisiana (another site)American Journal of Tropical Medicine and Hygiene (Cross et al., 2014)Six of 178 rodents trapped in New Orleans, all brown rats, carried a Seoul hantavirus variant first found in the city's rodents in the 1980s.
  23. referenceCarnival (another site)Merriam-WebsterCarnival is a season or festival of merrymaking before Lent; the word comes from Italian carnevale, from earlier carnelevare, literally removal of meat.
  24. referenceApplication of Multilocus Variable-Number Tandem-Repeat Analysis for Molecular Typing of the Agent of Leptospirosis (another site)Journal of Clinical Microbiology (Salaün et al., 2006)L. interrogans is the most common Leptospira species in human infections, but other pathogenic species, such as L. kirschneri and L. borgpetersenii, also often cause human leptospirosis.
  25. referenceLipopolysaccharide Endotoxins (another site)Annual Review of Biochemistry (Raetz and Whitfield, 2002)Bacterial lipopolysaccharide consists of a hydrophobic lipid A domain, a core oligosaccharide, and a distal polysaccharide, the O-antigen.
  26. referenceThe role and mechanisms of gram-negative bacterial outer membrane vesicles in inflammatory diseases (another site)Frontiers in Immunology (Chen et al., 2023)Gram-negative bacteria secrete outer membrane vesicles that deliver lipopolysaccharide, proteins, and other virulence factors to target cells.
  27. referenceJaundice (another site)MedlinePlus, U.S. National Library of Medicine
Transcript

A night shift in New Orleans during Mardi Gras

Howler monkeys, Carnaval, and yellow fever in Brazil

Canaries in the coal mine as warning systems

A Lancet paper on animals as disease reservoirs

Reservoirs, colonization, and asymptomatic carriers explained

Leptospira interrogans and the biology of spirochetes

How Weil's disease spreads and who it affects

The biphasic course of Weil's disease

Diagnosing and treating leptospirosis

Gerbils, Texas tigers, and a purple toy truck

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